Blaz Zupan Computer and Information Science University of Ljubljana Biography Publications Institution JoVE Articles Blaz Zupan has not added a biography. If you are Blaz Zupan and would like to personalize this page please email our Author Liaison for assistance. Publications Analysis of Alternative Splicing Associated with Aging and Neurodegeneration in the Human Brain Genome Research. Oct, 2011 | Pubmed ID: 21846794 BzpF is a CREB-like Transcription Factor That Regulates Spore Maturation and Stability in Dictyostelium Developmental Biology. Oct, 2011 | Pubmed ID: 21810415 Stage Prediction of Embryonic Stem Cell Differentiation from Genome-wide Expression Data Bioinformatics (Oxford, England). Sep, 2011 | Pubmed ID: 21765096 MiR669a and MiR669q Prevent Skeletal Muscle Differentiation in Postnatal Cardiac Progenitors The Journal of Cell Biology. Jun, 2011 | Pubmed ID: 21708977 SNPsyn: Detection and Exploration of SNP-SNP Interactions Nucleic Acids Research. Jul, 2011 | Pubmed ID: 21576219 Characterizing the RNA Targets and Position-dependent Splicing Regulation by TDP-43 Nature Neuroscience. Apr, 2011 | Pubmed ID: 21358640 ICLIP Predicts the Dual Splicing Effects of TIA-RNA Interactions PLoS Biology. 2010 | Pubmed ID: 21048981 Biomechanical and Clinical Alterations of the Hip Joint Following Femoral Neck Fracture and Implantation of Bipolar Hip Endoprosthesis Collegium Antropologicum. Sep, 2010 | Pubmed ID: 20977085 FragViz: Visualization of Fragmented Networks BMC Bioinformatics. 2010 | Pubmed ID: 20860802 Text Mining Approaches for Automated Literature Knowledge Extraction and Representation Studies in Health Technology and Informatics. 2010 | Pubmed ID: 20841825 Inference of the Molecular Mechanism of Action from Genetic Interaction and Gene Expression Data Omics : a Journal of Integrative Biology. Aug, 2010 | Pubmed ID: 20726796 ICLIP Reveals the Function of HnRNP Particles in Splicing at Individual Nucleotide Resolution Nature Structural & Molecular Biology. Jul, 2010 | Pubmed ID: 20601959 New Components of the Dictyostelium PKA Pathway Revealed by Bayesian Analysis of Expression Data BMC Bioinformatics. 2010 | Pubmed ID: 20356373 Conserved Developmental Transcriptomes in Evolutionarily Divergent Species Genome Biology. 2010 | Pubmed ID: 20236529 Does Replication Groups Scoring Reduce False Positive Rate in SNP Interaction Discovery? BMC Genomics. 2010 | Pubmed ID: 20092660 DictyExpress: a Dictyostelium Discoideum Gene Expression Database with an Explorative Data Analysis Web-based Interface BMC Bioinformatics. 2009 | Pubmed ID: 19706156 Report on EU-USA Workshop: How Systems Biology Can Advance Cancer Research (27 October 2008) Molecular Oncology. Feb, 2009 | Pubmed ID: 19383362 Polymorphic Members of the Lag Gene Family Mediate Kin Discrimination in Dictyostelium Current Biology : CB. Apr, 2009 | Pubmed ID: 19285397 DictyBase--a Dictyostelium Bioinformatics Resource Update Nucleic Acids Research. Jan, 2009 | Pubmed ID: 18974179 Open-source Tools for Data Mining Clinics in Laboratory Medicine. Mar, 2008 | Pubmed ID: 18194717 Predictive Data Mining in Clinical Medicine: Current Issues and Guidelines International Journal of Medical Informatics. Feb, 2008 | Pubmed ID: 17188928 Towards Knowledge-based Gene Expression Data Mining Journal of Biomedical Informatics. Dec, 2007 | Pubmed ID: 17683991 Visualization-based Cancer Microarray Data Classification Analysis Bioinformatics (Oxford, England). Aug, 2007 | Pubmed ID: 17586552 FreeViz--an Intelligent Multivariate Visualization Approach to Explorative Analysis of Biomedical Data Journal of Biomedical Informatics. Dec, 2007 | Pubmed ID: 17531544 Predictive Model for Estimating Risk of Crush Syndrome: a Data Mining Approach The Journal of Trauma. Apr, 2007 | Pubmed ID: 17426552 Knowledge-based Data Analysis and Interpretation Artificial Intelligence in Medicine. Jul, 2006 | Pubmed ID: 16690309 Developmentally Regulated DNA Methylation in Dictyostelium Discoideum Eukaryotic Cell. Jan, 2006 | Pubmed ID: 16400165 GenePath: from Mutations to Genetic Networks and Back Nucleic Acids Research. Jul, 2005 | Pubmed ID: 15980576 TA-clustering: Cluster Analysis of Gene Expression Profiles Through Temporal Abstractions International Journal of Medical Informatics. Aug, 2005 | Pubmed ID: 15941669 Epistasis Analysis with Global Transcriptional Phenotypes Nature Genetics. May, 2005 | Pubmed ID: 15821735 VizRank: Finding Informative Data Projections in Functional Genomics by Machine Learning Bioinformatics (Oxford, England). Feb, 2005 | Pubmed ID: 15358614 Microarray Data Mining with Visual Programming Bioinformatics (Oxford, England). Feb, 2005 | Pubmed ID: 15308546 GenePath: a System for Inference of Genetic Networks and Proposal of Genetic Experiments Artificial Intelligence in Medicine. Sep-Oct, 2003 | Pubmed ID: 12957783 GenePath: a System for Automated Construction of Genetic Networks from Mutant Data Bioinformatics (Oxford, England). Feb, 2003 | Pubmed ID: 12584124 iCLIP - Transcriptome-wide Mapping of Protein-RNA Interactions with Individual Nucleotide Resolution Julian Konig1, Kathi Zarnack2, Gregor Rot3, Tomaz Curk3, Melis Kayikci1, Blaz Zupan3, Daniel J. Turner4, Nicholas M. Luscombe2, Jernej Ule1 1Laboratory of Molecular Biology, Medical Research Council - MRC, 2European Bioinformatics Institute, EMBL Heidelberg, 3Computer and Information Science, University of Ljubljana, 4Wellcome Trust Genome Campus, Wellcome Trust Sanger Institute JoVE 2638 Biology
iCLIP - Transcriptome-wide Mapping of Protein-RNA Interactions with Individual Nucleotide Resolution Julian Konig1, Kathi Zarnack2, Gregor Rot3, Tomaz Curk3, Melis Kayikci1, Blaz Zupan3, Daniel J. Turner4, Nicholas M. Luscombe2, Jernej Ule1 1Laboratory of Molecular Biology, Medical Research Council - MRC, 2European Bioinformatics Institute, EMBL Heidelberg, 3Computer and Information Science, University of Ljubljana, 4Wellcome Trust Genome Campus, Wellcome Trust Sanger Institute JoVE 2638 Biology